DNA Computing: 9th International Workshop on DNA Based Computers, DNA9, Madison, WI, USA, June 1-3, 2003. Revised Papers [1 ed.] 3540209301, 9783540209300, 9783540246282

This book constitutes the thoroughly refereed post-proceedings of the 9th International Workshop on DNA Based Computers,

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Table of contents :
Front Matter....Pages -
A Lab-on-a-Chip Module for Bead Separation in DNA-Based Concept Learning....Pages 1-9
Parallel Translation of DNA Clusters by VCSEL Array Trapping and Temperature Control with Laser Illumination....Pages 10-18
Chemical Switching and Molecular Logic in Fluorescent-Labeled M-DNA....Pages 19-31
RCA-Based Detection Methods for Resolution Refutation....Pages 32-36
Word Design for Molecular Computing: A Survey....Pages 37-47
Time-Varying Distributed H Systems with Parallel Computations: The Problem Is Solved....Pages 48-54
Deadlock Decidability in Partial Parallel P Systems....Pages 55-60
Languages of DNA Based Code Words....Pages 61-73
Secondary Structure Design of Multi-state DNA Machines Based on Sequential Structure Transitions....Pages 74-85
Analyzing Secondary Structure Transition Paths of DNA/RNA Molecules....Pages 86-90
Self-Assembled Circuit Patterns....Pages 91-107
One Dimensional Boundaries for DNA Tile Self-Assembly....Pages 108-125
Proofreading Tile Sets: Error Correction for Algorithmic Self-Assembly....Pages 126-144
A DNA-Based Memory with In Vitro Learning and Associative Recall....Pages 145-156
Efficiency and Reliability of Semantic Retrieval in DNA-Based Memories....Pages 157-169
Nearest-Neighbor Thermodynamics of DNA Sequences with Single Bulge Loop....Pages 170-179
Mathematical Considerations in the Design of Microreactor-Based DNA Computers....Pages 180-189
Towards a Re-programmable DNA Computer....Pages 190-196
In Vitro Translation-Based Computations....Pages 197-202
Autonomous Biomolecular Computer Modeled after Retroviral Replication....Pages 203-212
Biomolecular Computing by Encoding of Regulated Phosphorylation-Dephosphorylation and Logic of Kinase-Phosphatase in Cells....Pages 213-218
Conformational Addressing Using the Hairpin Structure of Single-Strand DNA....Pages 219-224
Back Matter....Pages -

DNA Computing: 9th International Workshop on DNA Based Computers, DNA9, Madison, WI, USA, June 1-3, 2003. Revised Papers [1 ed.] 3540209301, 9783540209300, 9783540246282

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