DNA Computing: 9th International Workshop on DNA Based Computers, DNA9, Madison, WI, USA, June 1-3, 2003. Revised Papers [1 ed.]
3540209301, 9783540209300, 9783540246282
This book constitutes the thoroughly refereed post-proceedings of the 9th International Workshop on DNA Based Computers,
Table of contents : Front Matter....Pages - A Lab-on-a-Chip Module for Bead Separation in DNA-Based Concept Learning....Pages 1-9 Parallel Translation of DNA Clusters by VCSEL Array Trapping and Temperature Control with Laser Illumination....Pages 10-18 Chemical Switching and Molecular Logic in Fluorescent-Labeled M-DNA....Pages 19-31 RCA-Based Detection Methods for Resolution Refutation....Pages 32-36 Word Design for Molecular Computing: A Survey....Pages 37-47 Time-Varying Distributed H Systems with Parallel Computations: The Problem Is Solved....Pages 48-54 Deadlock Decidability in Partial Parallel P Systems....Pages 55-60 Languages of DNA Based Code Words....Pages 61-73 Secondary Structure Design of Multi-state DNA Machines Based on Sequential Structure Transitions....Pages 74-85 Analyzing Secondary Structure Transition Paths of DNA/RNA Molecules....Pages 86-90 Self-Assembled Circuit Patterns....Pages 91-107 One Dimensional Boundaries for DNA Tile Self-Assembly....Pages 108-125 Proofreading Tile Sets: Error Correction for Algorithmic Self-Assembly....Pages 126-144 A DNA-Based Memory with In Vitro Learning and Associative Recall....Pages 145-156 Efficiency and Reliability of Semantic Retrieval in DNA-Based Memories....Pages 157-169 Nearest-Neighbor Thermodynamics of DNA Sequences with Single Bulge Loop....Pages 170-179 Mathematical Considerations in the Design of Microreactor-Based DNA Computers....Pages 180-189 Towards a Re-programmable DNA Computer....Pages 190-196 In Vitro Translation-Based Computations....Pages 197-202 Autonomous Biomolecular Computer Modeled after Retroviral Replication....Pages 203-212 Biomolecular Computing by Encoding of Regulated Phosphorylation-Dephosphorylation and Logic of Kinase-Phosphatase in Cells....Pages 213-218 Conformational Addressing Using the Hairpin Structure of Single-Strand DNA....Pages 219-224 Back Matter....Pages -